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Top Questions
18
votes
How can we distinguish between true zero and dropout-zero counts in single-cell RNA-seq?
rna-seq
sequencing
asked Jun 13, 2017 at 13:03
bioinformatics.stackexchange.com
16
votes
Why Bioconductor?
r
bioconductor
asked Jun 11, 2017 at 1:28
bioinformatics.stackexchange.com
13
votes
What methods are available to find a cutoff value for non-expressed genes in RNA-seq?
rna-seq
r
asked Jun 13, 2017 at 10:23
bioinformatics.stackexchange.com
9
votes
Convert R RNA-seq data object to a Python object
rna-seq
r
python
asked Mar 21, 2018 at 16:27
bioinformatics.stackexchange.com
8
votes
What are the ways to keep track of branches in the analysis?
r
bioconductor
git
workflow-management
best-practice
asked Jun 15, 2017 at 11:13
bioinformatics.stackexchange.com
8
votes
Ultimate reproducibility in R?
r
reproducibility
workflow-management
asked Aug 31, 2017 at 14:06
bioinformatics.stackexchange.com
7
votes
Retrieve detailed gene descriptions
r
gene
annotation
public-databases
asked Oct 14, 2017 at 16:31
bioinformatics.stackexchange.com
7
votes
Network comparison of single cells (from sequencing data)
rna-seq
scrnaseq
networks
single-cell
asked May 29, 2018 at 13:50
bioinformatics.stackexchange.com
5
votes
What are the ways to process a list of differentially expressed genes?
rna-seq
r
deseq2
networks
asked Jun 8, 2017 at 12:07
bioinformatics.stackexchange.com
5
votes
Pathway level analysis of single-cell gene expression
r
scrnaseq
pathway
asked May 23, 2018 at 16:03
bioinformatics.stackexchange.com
1
2
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Top Answers
11
determining doublets in single-cell RNA-seq
bioinformatics.stackexchange.com
10
Convert R RNA-seq data object to a Python object
bioinformatics.stackexchange.com
7
Converting Ensembl Gene IDs to Entrez Gene IDs through biomart
bioinformatics.stackexchange.com
6
Retrieve detailed gene descriptions
bioinformatics.stackexchange.com
6
Resolution parameter in Seurat's FindClusters function for larger cell numbers
bioinformatics.stackexchange.com
6
Specific cell type identification in Single Cell Sequencing
bioinformatics.stackexchange.com
5
What do the FASTQ file names mean here?
bioinformatics.stackexchange.com
5
Create identicon of a DNA sequence
bioinformatics.stackexchange.com
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