I am a biologist, doing bioinformatics, working with networks of signaling pathways, using primarily python with igraph. Sometimes I code in R, PHP, javascript and bash. I love MySQL, especially 100+ lines long queries. I use LaTeX often, with beamer and TikZ, I love typography and graphic design.

Jul
16
awarded Supporter
Jul
16
awarded Autobiographer
Jul
2
comment igraph plotting: vertices too close in Kamada-Kawai layout
maybe it helps, here you can find two different approaches to achieve a layout emphasising groups: one operates with edge weights, other calculates a separate layout for each component, and after scales each sublayout to a square field of the plotting area
Jun
25
answered Graph analysis: Identify loop paths
Jun
25
answered igraph plotting: vertices too close in Kamada-Kawai layout
Jun
22
revised Getting vertex list from python-igraph
i think the op primarily needs g.vs
Jun
19
accepted Seaborn barplot with x_order: AttributeError: 'bool' object has no attribute 'sum'
Jun
19
comment Seaborn barplot with x_order: AttributeError: 'bool' object has no attribute 'sum'
Wonderful, it works! Thanks! It's a pity this is not documented.
Jun
19
asked Seaborn barplot with x_order: AttributeError: 'bool' object has no attribute 'sum'
Jun
18
awarded Yearling
Jun
5
answered How to get the vertices from an edge using igraph in python?
Jun
5
answered Using geo-coordinates as vertex coordinates in the igraph r-package
Jun
4
comment Using geo-coordinates as vertex coordinates in the igraph r-package
You need to call here igraph::plot() with rescale=FALSE parameter, otherwise it rescales the coordinates along both dimensions into a [-1; 1] interval.
Jun
4
answered python easy_install fails with SSL certificate error for all packages
Jun
2
comment A similarity measure with binary data: does this one have a name?
Thanks, this is exactly what I was looking for. Also this brief compendium is very nice, thanks for that too.
Jun
2
awarded Scholar
Jun
2
awarded Supporter
Jun
2
accepted A similarity measure with binary data: does this one have a name?
Jun
2
awarded Student
Jun
2
asked A similarity measure with binary data: does this one have a name?
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